Uploaded image for project: 'Data Management'
  1. Data Management
  2. DM-15056

lsst.afw.geom documentation build issue (lsst.afw.geom.all.doctree not found) and documenteer 0.3.0a5

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    Description

      With documenteer 0.3.0a5 there is a build issue with lsst.afw.geom related to the numpydoc/autoapi/automodapi extension stack. This ticket will diagnose and fix it.

      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.all'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.any'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.arcsecToRad'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.averageSpherePoint'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ceil'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.degToRad'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.floor'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.isAngle'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.makeAffineTransformFromTriple'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.masToRad'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.radToArcsec'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.radToDeg'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.radToMas'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:31: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.truncate'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.AffineTransform'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Angle'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.AngleUnit'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Box2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Box2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.BoxD'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.BoxI'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBaseCoordinateExpr2'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBaseCoordinateExpr3'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBaseExtent2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBaseExtent2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBaseExtent3D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBaseExtent3I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBasePoint2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBasePoint2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBasePoint3D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateBasePoint3I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateExpr'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateExpr2'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.CoordinateExpr3'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Extent'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Extent2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Extent2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Extent3D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Extent3I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ExtentBase2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ExtentBase2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ExtentBase3D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ExtentBase3I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ExtentD'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.ExtentI'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.LinearTransform'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Point'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Point2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Point2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Point3D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.Point3I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.PointBase2D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.PointBase2I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.PointBase3D'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.PointBase3I'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.PointD'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.PointI'
      /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/modules/lsst.afw.geom/index.rst:39: WARNING: toctree references unknown document 'py-api/lsst.afw.geom.SpherePoint'
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:13: WARNING: Definition list ends without a blank line; unexpected unindent.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:19: WARNING: Definition list ends without a blank line; unexpected unindent.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:10: WARNING: Definition list ends without a blank line; unexpected unindent.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:14: WARNING: Unexpected indentation.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:16: WARNING: Block quote ends without a blank line; unexpected unindent.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:22: WARNING: Definition list ends without a blank line; unexpected unindent.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMasksEqual:13: WARNING: Definition list ends without a blank line; unexpected unindent.
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:18: WARNING: Undefined substitution referenced: "val1 - val0".
      /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:21: WARNING: Undefined substitution referenced: "val1 - val0".
      looking for now-outdated files...
      Traceback (most recent call last):
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/documenteer/documenteer/sphinxrunner.py", line 85, in run_sphinx
          app.build(force_all, filenames)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/application.py", line 325, in build
          self.builder.build_all()
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 299, in build_all
          self.build(None, summary='all source files', method='all')
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 359, in build
          for docname in self.env.check_dependents(self.app, updated_docnames):
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/__init__.py",line 620, in check_dependents
          for docnames in app.emit('env-get-updated', self):
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/application.py", line 444, in emit
          return self.events.emit(event, self, *args)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/events.py", line 79, in emit
          results.append(callback(*args))
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 135, in get_updated_docs
          return self.assign_section_numbers(env) + self.assign_figure_numbers(env)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 277, in assign_figure_numbers
          _walk_doc(env.config.master_doc, tuple())
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 274, in _walk_doc
          _walk_doctree(docname, doctree, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 252, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 252, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 268, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 260, in _walk_doctree
          _walk_doc(subdocname, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 274, in _walk_doc
          _walk_doctree(docname, doctree, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 252, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 252, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 252, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 268, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 260, in _walk_doctree
          _walk_doc(subdocname, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/collectors/toctree.py", line 273, in _walk_doc
          doctree = env.get_doctree(docname)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/__init__.py",line 782, in get_doctree
          with open(doctree_filename, 'rb') as f:
      FileNotFoundError: [Errno 2] No such file or directory: '/Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/_build/doctree/py-api/lsst.afw.geom.all.doctree'
       
      Exception occurred:
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/pyvenv/lib/python3.6/site-packages/sphinx/environment/__init__.py",line 782, in get_doctree
          with open(doctree_filename, 'rb') as f:
      FileNotFoundError: [Errno 2] No such file or directory: '/Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/_build/doctree/py-api/lsst.afw.geom.all.doctree'
      The full traceback has been saved in /var/folders/sq/89jdjpmd1f52y795rzxs3xk00000gn/T/sphinx-err-0cxfnawc.log, if you want to report the issue to the developers.
      Please also report this if it was a user error, so that a better error message can be provided next time.
      A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
      

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            Confirmed the issue is currently localized to lsst.afw.geom. If I build without it

            stack-docs build -s lsst.afw.geom
            

            then the build completes.

            jsick Jonathan Sick added a comment - Confirmed the issue is currently localized to lsst.afw.geom . If I build without it stack-docs build -s lsst.afw.geom then the build completes.

            There are some additional docstring syntax errors:

            eading sources... [100%] releases/v14_0_tickets
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:13: WARNING: Definition list ends without a blank line; unexpected unindent.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:19: WARNING: Definition list ends without a blank line; unexpected unindent.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:10: WARNING: Definition list ends without a blank line; unexpected unindent.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:14: WARNING: Unexpected indentation.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:16: WARNING: Block quote ends without a blank line; unexpected unindent.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:22: WARNING: Definition list ends without a blank line; unexpected unindent.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMasksEqual:13: WARNING: Definition list ends without a blank line; unexpected unindent.
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:18: WARNING: Undefined substitution referenced: "val1 - val0".
            /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:21: WARNING: Undefined substitution referenced: "val1 - val0".
            /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/packages/afw/index.rst:33: WARNING: undefined label: lsst.afw.geom (if the link has no caption the label must precede a section header)
            

            jsick Jonathan Sick added a comment - There are some additional docstring syntax errors: eading sources... [100%] releases/v14_0_tickets /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:13: WARNING: Definition list ends without a blank line; unexpected unindent. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:19: WARNING: Definition list ends without a blank line; unexpected unindent. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:10: WARNING: Definition list ends without a blank line; unexpected unindent. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:14: WARNING: Unexpected indentation. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:16: WARNING: Block quote ends without a blank line; unexpected unindent. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:22: WARNING: Definition list ends without a blank line; unexpected unindent. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMasksEqual:13: WARNING: Definition list ends without a blank line; unexpected unindent. /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertImagesAlmostEqual:18: WARNING: Undefined substitution referenced: "val1 - val0". /Users/jsick/lsst/pipelines_lsst_io_stack/lsst_stack/stack/miniconda3-4.3.21-10a4fa6/DarwinX86/afw/16.0-9-gdf7162dbc/python/lsst/afw/image/testUtils.py:docstring of lsst.utils.tests.TestCase.assertMaskedImagesAlmostEqual:21: WARNING: Undefined substitution referenced: "val1 - val0". /Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/packages/afw/index.rst:33: WARNING: undefined label: lsst.afw.geom (if the link has no caption the label must precede a section header)
            tjenness Tim Jenness added a comment -

            Could this be related to DM-14429? (rowen?)

            tjenness Tim Jenness added a comment - Could this be related to DM-14429 ? ( rowen ?)

            Summary from PR:

            The primary purpose of this PR is to fix a Sphinx build failure with the lsst.afw.geom API reference docs. I think the issue is that since many of the APIs are primarily part of lsst.geom, some layer of the auto doc system was filtering those APIs out, while other parts kept those APIs. The interim solution was to ultimately skip those APIs using automodapi's skip argument.

            This PR also includes some minor doc improvements to regularize the doc system and fix warnings:

            • Relocated and improved table formatting of the FITS header reference topic
            • Improved docstrings in lsst.afw that were creating warnings
            • Relocated the "Footprint" topic
            • Improved titles of the SpanSet and Footprint topics

            stack-os-matrix: https://ci.lsst.codes/blue/organizations/jenkins/stack-os-matrix/detail/stack-os-matrix/28199/pipeline

            jsick Jonathan Sick added a comment - Summary from PR: The primary purpose of this PR is to fix a Sphinx build failure with the lsst.afw.geom API reference docs. I think the issue is that since many of the APIs are primarily part of lsst.geom, some layer of the auto doc system was filtering those APIs out, while other parts kept those APIs. The interim solution was to ultimately skip those APIs using automodapi's skip argument. This PR also includes some minor doc improvements to regularize the doc system and fix warnings: Relocated and improved table formatting of the FITS header reference topic Improved docstrings in lsst.afw that were creating warnings Relocated the "Footprint" topic Improved titles of the SpanSet and Footprint topics stack-os-matrix: https://ci.lsst.codes/blue/organizations/jenkins/stack-os-matrix/detail/stack-os-matrix/28199/pipeline
            rowen Russell Owen added a comment -

            Very nice change. A few requests on github.

            rowen Russell Owen added a comment - Very nice change. A few requests on github.

            Thanks rowen for reviewing.

            jsick Jonathan Sick added a comment - Thanks rowen for reviewing.

            People

              jsick Jonathan Sick
              jsick Jonathan Sick
              Russell Owen
              Jonathan Sick, Krzysztof Findeisen, Russell Owen, Tim Jenness
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