The pipeline task conversion processes involves separating all code which needs access to io from algorithm code. In some cases this is not yet possible (such as with IdFactories) as the middleware necessary for doing this does not yet exist.

However, to make process on the bulk of the conversion process it is possible to use stand in code to allow conversion and testing in place of a final solution.

This ticket will cover the work of going back to all the places where this occurs and fixing it up to a final solution once the required middleware exists.