Uploaded image for project: 'Data Management'
  1. Data Management
  2. DM-16398

d_2018_11_01 pipelines.lsst.io build failure

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    • Story Points:
      0.7
    • Epic Link:
    • Team:
      SQuaRE

      Description

      In documenteer build #242 for d_2018_11_01 I'm seeing this build failure:

      reading sources... [  0%] getting-started/coaddition                           
      reading sources... [  0%] getting-started/data-setup                           
      reading sources... [  0%] getting-started/display                              
      reading sources... [  0%] getting-started/index                                
      reading sources... [  0%] getting-started/multiband-analysis                   
      reading sources... [  0%] getting-started/photometry                           
      reading sources... [  0%] getting-started/processccd                           
      reading sources... [  1%] index                                                
      reading sources... [  1%] install/demo                                         
      reading sources... [  1%] install/docker                                       
      reading sources... [  1%] install/git-lfs                                      
      reading sources... [  1%] install/index                                        
      reading sources... [  1%] install/lsstsw                                       
      reading sources... [  1%] install/newinstall                                   
      reading sources... [  2%] install/package-development                          
      reading sources... [  2%] install/prereqs/centos                               
      reading sources... [  2%] install/prereqs/debian                               
      reading sources... [  2%] install/prereqs/index                                
      reading sources... [  2%] install/prereqs/macos                                
      reading sources... [  2%] install/setup                                        
      reading sources... [  2%] install/top-level-packages                           
      reading sources... [  3%] known-issues                                         
      reading sources... [  3%] metrics                                              
      reading sources... [  3%] modules/lsst.afw.cameraGeom/index                    
      reading sources... [  3%] modules/lsst.afw.coord/index                         
      reading sources... [  3%] modules/lsst.afw.detection/Footprint                 
      reading sources... [  3%] modules/lsst.afw.detection/index                     
      reading sources... [  3%] modules/lsst.afw.display/index                       
      reading sources... [  4%] modules/lsst.afw.fits/index                          
      reading sources... [  4%] modules/lsst.afw.formatters/index                    
      reading sources... [  4%] modules/lsst.afw.geom/SpanSet                        
      reading sources... [  4%] modules/lsst.afw.geom/index                          
      reading sources... [  4%] modules/lsst.afw.image/exposure-fits-metadata        
      reading sources... [  4%] modules/lsst.afw.image/index                         
      reading sources... [  4%] modules/lsst.afw.image/indexing-conventions          
      reading sources... [  5%] modules/lsst.afw.math/index                          
      reading sources... [  5%] modules/lsst.afw.table/index                         
      reading sources... [  5%] modules/lsst.ap.association/index                    
      reading sources... [  5%] modules/lsst.ap.pipe/getting-started                 
      reading sources... [  5%] modules/lsst.ap.pipe/index                           
      reading sources... [  5%] modules/lsst.ap.pipe/pipeline-overview               
      reading sources... [  5%] modules/lsst.ap.pipe/pipeline-tutorial               
      reading sources... [  6%] modules/lsst.ap.verify/command-line-reference        
      reading sources... [  6%] modules/lsst.ap.verify/configuration                 
      reading sources... [  6%] modules/lsst.ap.verify/datasets                      
      reading sources... [  6%] modules/lsst.ap.verify/datasets-butler               
      reading sources... [  6%] modules/lsst.ap.verify/datasets-creation             
      reading sources... [  6%] modules/lsst.ap.verify/datasets-install              
      reading sources... [  6%] modules/lsst.ap.verify/failsafe                      
      reading sources... [  7%] modules/lsst.ap.verify/index                         
      reading sources... [  7%] modules/lsst.ap.verify/new-metrics                   
      reading sources... [  7%] modules/lsst.ap.verify/running                       
      reading sources... [  7%] modules/lsst.base/index                              
      reading sources... [  7%] modules/lsst.coadd.chisquared/index                  
      reading sources... [  7%] modules/lsst.coadd.utils/index                       
      reading sources... [  7%] modules/lsst.daf.butler/index                        
      reading sources... [  7%] modules/lsst.dax.ppdb/index                          
      reading sources... [  8%] modules/lsst.display.ds9/index                       
      reading sources... [  8%] modules/lsst.display.firefly/index                   
      reading sources... [  8%] modules/lsst.ip.diffim/index                         
      reading sources... [  8%] modules/lsst.ip.isr/index                            
      reading sources... [  8%] modules/lsst.jointcal/index                          
      reading sources... [  8%] modules/lsst.log/index                               
      reading sources... [  8%] modules/lsst.meas.algorithms/index                   
      reading sources... [  9%] modules/lsst.meas.base/index                         
      reading sources... [  9%] modules/lsst.meas.base/intro                         
      reading sources... [  9%] modules/lsst.meas.base/reconstructing-measurements   
      reading sources... [  9%] modules/lsst.meas.deblender/index                    
      reading sources... [  9%] modules/lsst.meas.extensions.psfex/index             
      reading sources... [  9%] modules/lsst.meas.extensions.shapeHSM/index          
      reading sources... [  9%] modules/lsst.meas.extensions.simpleShape/index       
      reading sources... [ 10%] modules/lsst.meas.modelfit/index                     
      reading sources... [ 10%] modules/lsst.obs.base/index                          
      reading sources... [ 10%] modules/lsst.obs.cfht/index                          
      reading sources... [ 10%] modules/lsst.obs.lsstSim/index                       
      reading sources... [ 10%] modules/lsst.obs.test/index                          
      reading sources... [ 10%] modules/lsst.pex.exceptions/index                    
      reading sources... [ 10%] modules/lsst.pipe.base/command-line-task-argument-reference
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-config-howto
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-data-repo-howto
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-dataid-howto
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-logging-howto
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-parallel-howto
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-prov-howto  
      reading sources... [ 11%] modules/lsst.pipe.base/command-line-task-retargeting-howto
      reading sources... [ 12%] modules/lsst.pipe.base/creating-a-command-line-task  
      reading sources... [ 12%] modules/lsst.pipe.base/creating-a-task               
      reading sources... [ 12%] modules/lsst.pipe.base/index                         
      reading sources... [ 12%] modules/lsst.pipe.base/task-framework-overview       
      reading sources... [ 12%] modules/lsst.pipe.drivers/index                      
      reading sources... [ 12%] modules/lsst.pipe.tasks/configs/lsst.pipe.tasks.colorterms.Colorterm
      reading sources... [ 12%] modules/lsst.pipe.tasks/configs/lsst.pipe.tasks.colorterms.ColortermDict
      reading sources... [ 13%] modules/lsst.pipe.tasks/configs/lsst.pipe.tasks.colorterms.ColortermLibrary
      reading sources... [ 13%] modules/lsst.pipe.tasks/configs/lsst.pipe.tasks.multiBand.CullPeaksConfig
      reading sources... [ 13%] modules/lsst.pipe.tasks/configs/lsst.pipe.tasks.selectImages.DatabaseSelectImagesConfig
      reading sources... [ 13%] modules/lsst.pipe.tasks/configs/lsst.pipe.tasks.snapCombine.InitialPsfConfig
      reading sources... [ 13%] modules/lsst.pipe.tasks/index                        
      reading sources... [ 13%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.assembleCoadd.AssembleCoaddTask
      reading sources... [ 13%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.assembleCoadd.CompareWarpAssembleCoaddTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.assembleCoadd.SafeClipAssembleCoaddTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.calibrate.CalibrateTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.characterizeImage.CharacterizeImageTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.coaddInputRecorder.CoaddInputRecorderTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.dcrAssembleCoadd.DcrAssembleCoaddTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.dcrMultiBand.DeblendDcrCoaddSourcesTask
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.dcrMultiBand.DetectDcrCoaddSources
      reading sources... [ 14%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.dcrMultiBand.MeasureMergedDcrCoaddSourcesTask
      reading sources... [ 15%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.dcrMultiBand.MergeDcrMeasurementsTask
      reading sources... [ 15%] modules/lsst.pipe.tasks/tasks/lsst.pipe.tasks.dcrMultiBandMergeDcrDetectionsTask
      /j/ws/sqre/infra/documenteer/doc_template/modules/lsst.afw.detection/index.rst:19: WARNING: toctree contains reference to nonexisting document 'modules/lsst.afw.detection/: maxdepth: 1'
       
      Traceback (most recent call last):
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/documenteer/sphinxrunner.py", line 85, in run_sphinx
          app.build(force_all, filenames)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/application.py", line 325, in build
          self.builder.build_all()
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 299, in build_all
          self.build(None, summary='all source files', method='all')
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/builders/__init__.py", line 355, in build
          updated_docnames = set(self.env.update(self.config, self.srcdir, self.doctreedir))
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/environment/__init__.py", line 568, in update
          self._read_serial(docnames, self.app)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/environment/__init__.py", line 587, in _read_serial
          self.read_doc(docname, app)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/environment/__init__.py", line 662, in read_doc
          doctree = read_doc(self.app, self, self.doc2path(docname))
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/io.py", line 302, in read_doc
          pub.publish()
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/core.py", line 217, in publish
          self.settings)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/readers/__init__.py", line 72, in read
          self.parse()
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/readers/__init__.py", line 78, in parse
          self.parser.parse(self.input, document)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/parsers.py", line 85, in parse
          self.statemachine.run(inputstring, document, inliner=self.inliner)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 171, in run
          input_source=document['source'])
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/statemachine.py", line 239, in run
          context, state, transitions)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/statemachine.py", line 460, in check_line
          return method(match, context, next_state)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2988, in text
          self.section(title.lstrip(), source, style, lineno + 1, messages)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 327, in section
          self.new_subsection(title, lineno, messages)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 395, in new_subsection
          node=section_node, match_titles=True)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 282, in nested_parse
          node=node, match_titles=match_titles)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 196, in run
          results = StateMachineWS.run(self, input_lines, input_offset)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/statemachine.py", line 239, in run
          context, state, transitions)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/statemachine.py", line 460, in check_line
          return method(match, context, next_state)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2753, in underline
          self.section(title, source, style, lineno - 1, messages)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 327, in section
          self.new_subsection(title, lineno, messages)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 395, in new_subsection
          node=section_node, match_titles=True)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 282, in nested_parse
          node=node, match_titles=match_titles)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 196, in run
          results = StateMachineWS.run(self, input_lines, input_offset)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/statemachine.py", line 239, in run
          context, state, transitions)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/statemachine.py", line 460, in check_line
          return method(match, context, next_state)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2326, in explicit_markup
          nodelist, blank_finish = self.explicit_construct(match)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2338, in explicit_construct
          return method(self, expmatch)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2081, in directive
          directive_class, match, type_name, option_presets)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/docutils/parsers/rst/states.py", line 2130, in run_directive
          result = directive_instance.run()
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/documenteer/sphinxext/lssttasks/pyapisummary.py", line 57, in run
          new_nodes.extend(self._format_summary_node(task_class))
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/documenteer/sphinxext/lssttasks/pyapisummary.py", line 83, in _format_summary_node
          classname))
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/documenteer/sphinxext/lssttasks/pyapisummary.py", line 128, in _format_method_nodes
          'py:meth')
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/documenteer/sphinxext/lssttasks/pyapisummary.py", line 182, in _create_doc_summary
          summary_text = extract_docstring_summary(get_docstring(obj))
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/documenteer/sphinxext/lssttasks/taskutils.py", line 183, in get_docstring
          return prepare_docstring(docstring, ignore=1)
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/util/docstrings.py", line 29, in prepare_docstring
          lines = s.expandtabs().splitlines()
      AttributeError: 'NoneType' object has no attribute 'expandtabs'
       
      Exception occurred:
        File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.6/site-packages/sphinx/util/docstrings.py", line 29, in prepare_docstring
          lines = s.expandtabs().splitlines()
      AttributeError: 'NoneType' object has no attribute 'expandtabs'
      The full traceback has been saved in /tmp/sphinx-err-ptm02ys5.log, if you want to report the issue to the developers.
      Please also report this if it was a user error, so that a better error message can be provided next time.
      A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
      2018-11-01 12:58:05,081 ERROR documenteer.stackdocs.build: Sphinx errored: code 1
      script returned exit code 1
      

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              • Assignee:
                jsick Jonathan Sick
                Reporter:
                jsick Jonathan Sick
                Watchers:
                Jonathan Sick
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                • Created:
                  Updated:
                  Resolved:

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