looking for now-outdated files...
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Traceback (most recent call last):
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/documenteer/sphinxrunner.py", line 85, in run_sphinx
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app.build(force_all, filenames)
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/application.py", line 325, in build
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self.builder.build_all()
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/builders/__init__.py", line 299, in build_all
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self.build(None, summary='all source files', method='all')
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/builders/__init__.py", line 359, in build
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for docname in self.env.check_dependents(self.app, updated_docnames):
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/__init__.py", line 623, in check_dependents
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for docnames in app.emit('env-get-updated', self):
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/application.py", line 444, in emit
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return self.events.emit(event, self, *args)
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/events.py", line 79, in emit
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results.append(callback(*args))
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 135, in get_updated_docs
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return self.assign_section_numbers(env) + self.assign_figure_numbers(env)
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 278, in assign_figure_numbers
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_walk_doc(env.config.master_doc, tuple())
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 275, in _walk_doc
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_walk_doctree(docname, doctree, secnum)
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
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_walk_doctree(docname, subnode, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
|
_walk_doctree(docname, subnode, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 269, in _walk_doctree
|
_walk_doctree(docname, subnode, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 261, in _walk_doctree
|
_walk_doc(subdocname, secnum)
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 275, in _walk_doc
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_walk_doctree(docname, doctree, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
|
_walk_doctree(docname, subnode, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
|
_walk_doctree(docname, subnode, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
|
_walk_doctree(docname, subnode, secnum)
|
[Previous line repeated 1 more time]
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File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 269, in _walk_doctree
|
_walk_doctree(docname, subnode, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 261, in _walk_doctree
|
_walk_doc(subdocname, secnum)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 274, in _walk_doc
|
doctree = env.get_doctree(docname)
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/__init__.py", line 785, in get_doctree
|
with open(doctree_filename, 'rb') as f:
|
FileNotFoundError: [Errno 2] No such file or directory: '/j/ws/sqre/infra/documenteer/doc_template/_build/doctree/py-api/lsst.afw.table.multiMatch.CoordKey.doctree'
|
|
Exception occurred:
|
File "/j/ws/sqre/infra/documenteer/doc_template/home/.local/lib/python3.7/site-packages/sphinx/environment/__init__.py", line 785, in get_doctree
|
with open(doctree_filename, 'rb') as f:
|
FileNotFoundError: [Errno 2] No such file or directory: '/j/ws/sqre/infra/documenteer/doc_template/_build/doctree/py-api/lsst.afw.table.multiMatch.CoordKey.doctree'
|
The full traceback has been saved in /tmp/sphinx-err-zna3ruxo.log, if you want to report the issue to the developers.
|
Please also report this if it was a user error, so that a better error message can be provided next time.
|
A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
|
2019-07-17 12:21:44,310 ERROR documenteer.stackdocs.build: Sphinx errored: code 1
|
script returned exit code 1
|
Bug
The main problem what that extra automodapi statements were re-including objects that were already covered by the automodapi statement for lsst.afw.table itself.
There are also several syntax errors in the docstrings:
/Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/doc/lsst.afw.multiband/multiband.rst:503: WARNING: Inline interpreted text or phrase reference start-string without end-string./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/doc/lsst.afw.multiband/multiband.rst:503: WARNING: Inline interpreted text or phrase reference start-string without end-string./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/doc/lsst.afw.table/index.rst:26: WARNING: toctree contains reference to nonexisting document 'lsst.afw.table/design-notes'/Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/base/baseContinued.py:docstring of lsst.afw.table.AmpInfoCatalog.asAstropy:21: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.AmpInfoColumnView.extract:27: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.AmpInfoColumnView.extract:33: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/base/baseContinued.py:docstring of lsst.afw.table.BaseCatalog.asAstropy:21: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.BaseColumnView.extract:27: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.BaseColumnView.extract:33: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/base/baseContinued.py:docstring of lsst.afw.table.Catalog.asAstropy:21: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/base/baseContinued.py:docstring of lsst.afw.table.ExposureCatalog.asAstropy:21: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.ExposureColumnView.extract:27: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.ExposureColumnView.extract:33: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/exposure/exposureContinued.py:docstring of lsst.afw.table.ExposureRecord.getCalib:2: WARNING: Error in "deprecated" directive:1 argument(s) required, 0 supplied... deprecated::/Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/exposure/exposureContinued.py:docstring of lsst.afw.table.ExposureRecord.getCalib:3: WARNING: Explicit markup ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/exposure/exposureContinued.py:docstring of lsst.afw.table.ExposureRecord.setCalib:2: WARNING: Error in "deprecated" directive:1 argument(s) required, 0 supplied... deprecated::/Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/exposure/exposureContinued.py:docstring of lsst.afw.table.ExposureRecord.setCalib:3: WARNING: Explicit markup ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/schema/schemaContinued.py:docstring of lsst.afw.table.Schema.extract:16: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/schema/schemaContinued.py:docstring of lsst.afw.table.Schema.extract:20: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/schema/schemaContinued.py:docstring of lsst.afw.table.Schema.extract:24: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/base/baseContinued.py:docstring of lsst.afw.table.SimpleCatalog.asAstropy:21: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.SimpleColumnView.extract:27: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.SimpleColumnView.extract:33: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/base/baseContinued.py:docstring of lsst.afw.table.SourceCatalog.asAstropy:21: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/source/sourceContinued.py:docstring of lsst.afw.table.SourceCatalog.getChildren:9: WARNING: Inline emphasis start-string without end-string./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.SourceColumnView.extract:27: WARNING: Unexpected indentation./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/baseColumnView/baseColumnViewContinued.py:docstring of lsst.afw.table.SourceColumnView.extract:33: WARNING: Block quote ends without a blank line; unexpected unindent./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/catalogMatches.py:docstring of lsst.afw.table.copyAliasMapWithPrefix:4: WARNING: Unknown target name: "src"./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/catalogMatches.py:docstring of lsst.afw.table.copyAliasMapWithPrefix:4: WARNING: Unknown target name: "ref"./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/catalogMatches.py:docstring of lsst.afw.table.matchesFromCatalog:8: WARNING: Unknown target name: "ref"./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/catalogMatches.py:docstring of lsst.afw.table.matchesFromCatalog:8: WARNING: Unknown target name: "src"./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/catalogMatches.py:docstring of lsst.afw.table.matchesToCatalog:20: WARNING: Unknown target name: "ref"./Users/jsick/lsst/pipelines_lsst_io_stack/lsstsw_stack/afw/python/lsst/afw/table/catalogMatches.py:docstring of lsst.afw.table.matchesToCatalog:20: WARNING: Unknown target name: "src".