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  1. Data Management
  2. DM-21078

Fix pipelines.lsst.io build issue from d_2019_08_23

    Details

    • Templates:
    • Story Points:
      0.5
    • Team:
      SQuaRE

      Description

      Since d_2019_08_23 the pipelines.lsst.io builds have been breaking. (#599)

      The issue seems to be in obs_base:

      Traceback (most recent call last):
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/documenteer/sphinxrunner.py", line 85, in run_sphinx
          app.build(force_all, filenames)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/application.py", line 325, in build
          self.builder.build_all()
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/builders/__init__.py", line 299, in build_all
          self.build(None, summary='all source files', method='all')
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/builders/__init__.py", line 359, in build
          for docname in self.env.check_dependents(self.app, updated_docnames):
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/__init__.py", line 623, in check_dependents
          for docnames in app.emit('env-get-updated', self):
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/application.py", line 444, in emit
          return self.events.emit(event, self, *args)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/events.py", line 79, in emit
          results.append(callback(*args))
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 135, in get_updated_docs
          return self.assign_section_numbers(env) + self.assign_figure_numbers(env)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 278, in assign_figure_numbers
          _walk_doc(env.config.master_doc, tuple())
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 275, in _walk_doc
          _walk_doctree(docname, doctree, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 269, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 261, in _walk_doctree
          _walk_doc(subdocname, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 275, in _walk_doc
          _walk_doctree(docname, doctree, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 253, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        [Previous line repeated 1 more time]
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 269, in _walk_doctree
          _walk_doctree(docname, subnode, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 261, in _walk_doctree
          _walk_doc(subdocname, secnum)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/collectors/toctree.py", line 274, in _walk_doc
          doctree = env.get_doctree(docname)
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/__init__.py", line 785, in get_doctree
          with open(doctree_filename, 'rb') as f:
      FileNotFoundError: [Errno 2] No such file or directory: '/Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/_build/doctree/py-api/lsst.obs.base.makeSkyWcs.doctree'
       
      Exception occurred:
        File "/Users/jsick/lsst/pipelines_lsst_io_stack/stacks/d_2019_08_26/python/miniconda3-4.5.12/envs/lsst-scipipe-1172c30/lib/python3.7/site-packages/sphinx/environment/__init__.py", line 785, in get_doctree
          with open(doctree_filename, 'rb') as f:
      FileNotFoundError: [Errno 2] No such file or directory: '/Users/jsick/lsst/pipelines_lsst_io_stack/pipelines_lsst_io/_build/doctree/py-api/lsst.obs.base.makeSkyWcs.doctree'
      The full traceback has been saved in /var/folders/n6/2vtqtjr90fj1dftc8j4290w80000gn/T/sphinx-err-pqc580lx.log, if you want to report the issue to the developers.
      Please also report this if it was a user error, so that a better error message can be provided next time.
      A bug report can be filed in the tracker at <https://github.com/sphinx-doc/sphinx/issues>. Thanks!
      
      

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            • Assignee:
              jsick Jonathan Sick
              Reporter:
              jsick Jonathan Sick
              Reviewers:
              John Parejko
              Watchers:
              John Parejko, Jonathan Sick
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              0 Vote for this issue
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              2 Start watching this issue

              Dates

              • Created:
                Updated:
                Resolved:

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