OK, made the 2 fixes you requested and checked the outputs.
I'm glad I decided to try to get this ticket in before w14, because we haven't had colors in our object tables since the filter to band migration (in either Gen2 or Gen3). I opened a new PR for obs_subaru specifying the filters as 'r' rather than 'HSC-R'. This works in both Gen2 and Gen3. Also fixed the NaN reference columns ci_hsc where we only have 'r' and 'i'.
New Jenkins working here: https://ci.lsst.codes/job/stack-os-matrix/33933/display/redirect
Ready for review.
These tasks are run in ci_hsc. Jenkins working here: https://ci.lsst.codes/job/stack-os-matrix/33916/display/redirect
Will compare the Gen2 and Gen3 file contents from ci_hsc tomorrow. We don't necessarily expect these to work on older converted repos. Bands are different in the older repos (These tasks run on older converted repos, but contents are NaN because of the bands) and patch numbers are strings->ints.
Gen3 objectTables will have one more column: 'skymap'.