Details
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Type:
Story
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Status: Done
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Resolution: Done
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Fix Version/s: None
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Component/s: obs_lsst, obs_subaru, pipe_tasks
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Labels:
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Story Points:1
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Team:Architecture
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Urgent?:No
Description
Hello,
An attempt to run a workflow generated on environment different to the edge node setup leads to this error https://ai-idds-01.cern.ch:25443/cache/DOMA_Harvester_1009468.out :
botocore.hooks DEBUG: Event after-call.s3.HeadObject: calling handler <bound method RetryQuotaChecker.release_retry_quota of <botocore.retries.standard.RetryQuotaChecker object at 0x7fce58f962b0>> |
transformSourceTable INFO: from /home/spadolski/wrk/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/obs_subaru/21.0.0-27-g1176d449+70a9c181f9/policy/Source.yaml |
Traceback (most recent call last):
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d//bin/pipetask", line 29, in <module> |
sys.exit(main())
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/cli/pipetask.py", line 43, in main |
return cli() |
File "/opt/lsst/software/stack/conda/miniconda3-py38_4.9.2/envs/lsst-scipipe-0.4.3/lib/python3.8/site-packages/click/core.py", line 829, in _call_ |
return self.main(*args, **kwargs) |
File "/opt/lsst/software/stack/conda/miniconda3-py38_4.9.2/envs/lsst-scipipe-0.4.3/lib/python3.8/site-packages/click/core.py", line 782, in main |
rv = self.invoke(ctx)
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File "/opt/lsst/software/stack/conda/miniconda3-py38_4.9.2/envs/lsst-scipipe-0.4.3/lib/python3.8/site-packages/click/core.py", line 1259, in invoke |
return _process_result(sub_ctx.command.invoke(sub_ctx)) |
File "/opt/lsst/software/stack/conda/miniconda3-py38_4.9.2/envs/lsst-scipipe-0.4.3/lib/python3.8/site-packages/click/core.py", line 1066, in invoke |
return ctx.invoke(self.callback, **ctx.params) |
File "/opt/lsst/software/stack/conda/miniconda3-py38_4.9.2/envs/lsst-scipipe-0.4.3/lib/python3.8/site-packages/click/core.py", line 610, in invoke |
return callback(*args, **kwargs) |
File "/opt/lsst/software/stack/conda/miniconda3-py38_4.9.2/envs/lsst-scipipe-0.4.3/lib/python3.8/site-packages/click/decorators.py", line 21, in new_func |
return f(get_current_context(), *args, **kwargs) |
File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/cli/cmd/commands.py", line 103, in run |
script.run(qgraphObj=qgraph, **kwargs)
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/cli/script/run.py", line 167, in run |
f.runPipeline(qgraphObj, taskFactory, args)
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/cmdLineFwk.py", line 597, in runPipeline |
preExecInit.initialize(graph,
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/preExecInit.py", line 89, in initialize |
self.saveInitOutputs(graph)
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/preExecInit.py", line 182, in saveInitOutputs |
task = self.taskFactory.makeTask(taskDef.taskClass, taskDef.config, None, self.butler)
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/ctrl_mpexec/21.0.0-24-g0c1e3ff+d4d6b51e8d/python/lsst/ctrl/mpexec/taskFactory.py", line 93, in makeTask |
task = taskClass(config=config, initInputs=initInputs)
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/pipe_tasks/21.0.0-58-g436064c8+549a115573/python/lsst/pipe/tasks/postprocess.py", line 571, in _init_ |
self.funcs = CompositeFunctor.from_file(self.config.functorFile)
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File "/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/pipe_tasks/21.0.0-58-g436064c8+549a115573/python/lsst/pipe/tasks/functors.py", line 510, in from_file |
with open(filename) as f:
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FileNotFoundError: [Errno 2] No such file or directory: '/home/spadolski/wrk/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/obs_subaru/21.0.0-27-g1176d449+70a9c181f9/policy/Source.yaml' |
That is obvious that the path in wrong, this is the path on the submitting machine, not at the edge node container.
I assume that the problems arises here: https://github.com/lsst/obs_subaru/blob/master/config/transformSourceTable.py#L5 or, more specifically here: https://github.com/lsst/utils/blob/master/src/packaging.cc#L39
In the container:
(lsst-scipipe-0.4.3) [lsst@b65d486014ba stack]$ env | grep OBS_SUBARU_DIR
OBS_SUBARU_DIR=/opt/lsst/software/stack/stack/miniconda3-py38_4.9.2-0.4.3/Linux64/obs_subaru/21.0.0-27-g1176d449+70a9c181f9
Can this be fixed?
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Yusra AlSayyad can you please review this? It's a couple of lines in pipe_tasks and then tweaks to the configs in obs_lsst and obs_subaru. Jenkins is running at the moment.
Thanks for doing this.
Looks good. Would feel better if you kicked off a ci_imsim too.
Sergey Padolski hopefully weekly 27 will fix your PanDA problem.
Thanks a lot, Tim Jenness!
Sergey Padolski
added a comment - Thanks a lot, Tim Jenness ! 
Yes please