Details
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Type:
Bug
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Status: Won't Fix
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Resolution: Done
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Fix Version/s: None
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Component/s: Developer Infrastructure, psfex, sconsUtils
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Labels:None
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Team:SQuaRE
Description
Building lsst_apps -t w_2015_35 fails on my laptop:
SCONSFLAGS="opt=3 -Q cc=clang" eups distrib install lsst_apps -t w_2015_35
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[ 1/53 ] cfitsio 3360.lsst1 (already installed) done.
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[ 2/53 ] doxygen 1.8.5 (already installed) done.
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[ 3/53 ] eigen 3.2.0 (already installed) done.
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[ 4/53 ] fftw 3.3.3-1-g8fdba61 (already installed) done.
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[ 5/53 ] gsl 1.16.lsst1 (already installed) done.
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[ 6/53 ] minuit2 5.28.00 (already installed) done.
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[ 7/53 ] mysqlclient 5.1.73.lsst1-1-gb8bcc43 (already installed) done.
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[ 8/53 ] python 0.0.1 (already installed) done.
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[ 9/53 ] swig 3.0.2.lsst1 (already installed) done.
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[ 10/53 ] xpa 2.1.15.lsst2 (already installed) done.
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[ 11/53 ] boost 1.55.0.1.lsst2+3 (already installed) done.
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[ 12/53 ] mysqlpython 1.2.3+17 (already installed) done.
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[ 13/53 ] numpy 0.0.1 (already installed) done.
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[ 14/53 ] scons 2.3.5 (already installed) done.
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[ 15/53 ] wcslib 4.14+7 (already installed) done.
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[ 16/53 ] astrometry_net 0.50.1+6 (already installed) done.
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[ 17/53 ] matplotlib 0.0.1 (already installed) done.
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[ 18/53 ] pyfits 3.2.4.lsst1+3 (already installed) done.
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[ 19/53 ] sconsUtils 10.1-7-ga43ce92+1 (already installed) done.
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[ 20/53 ] astrometry_net_data 10.0+30 (already installed) done.
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[ 21/53 ] base 10.1-1-g8080078+19 (already installed) done.
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[ 22/53 ] geom 10.0+29 (already installed) done.
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[ 23/53 ] psfex master-ge3d792d24f ...
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***** error: from /Users/lsst/products/EupsBuildDir/DarwinX86/psfex-master-ge3d792d24f/build.log:
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"_fftwf_execute", referenced from:
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_fft_conv in fft.os
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_fft_rtf in fft.os
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_fft_ctf in fft.os
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"_fftwf_free", referenced from:
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_fft_conv in fft.os
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"_fftwf_malloc", referenced from:
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_fft_conv in fft.os
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_fft_rtf in fft.os
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"_fftwf_plan_dft_2d", referenced from:
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_fft_ctf in fft.os
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"_fftwf_plan_dft_c2r_2d", referenced from:
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_fft_conv in fft.os
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"_fftwf_plan_dft_r2c_2d", referenced from:
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_fft_conv in fft.os
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_fft_rtf in fft.os
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ld: symbol(s) not found for architecture x86_64
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clang: error: linker command failed with exit code 1 (use -v to see invocation)
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scons: *** [lib/libpsfex.dylib] Error 1
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+ exit -4
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eups distrib: Failed to build psfex-master-ge3d792d24f.eupspkg: Command:
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source /Users/rhl/eups/bin/setups.sh; export EUPS_PATH=/Users/lsst/products; (/Users/lsst/products/EupsBuildDir/DarwinX86/psfex-master-ge3d792d24f/build.sh) >> /Users/lsst/products/EupsBuildDir/DarwinX86/psfex-master-ge3d792d24f/build.log 2>&1 4>/Users/lsst/products/EupsBuildDir/DarwinX86/psfex-master-ge3d792d24f/build.msg
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exited with code 252
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The linker command is:
clang -o lib/libpsfex.dylib -dynamiclib -Wl,-install_name -Wl,libpsfex.dylib -Wl,-headerpad_max_install_names src/levmar/lmbc.os src/levmar/Axb.os src/wcs_utils.os src/sample_utils.os src/fits/fitsmisc.os src/dummies.os src/diagnostic.os src/levmar/lm.os src/levmar/lmblec.os src/levmar/lmbleic.os src/field_utils.os src/fft.os src/psf.os src/field.os src/makeit2.os src/context.os src/misc.os src/homo.os src/wcs/poly.os src/xml.os src/prefs.os src/vignet.os src/pca.os src/levmar/misc.os src/levmar/lmlec.os -Llib -L/Users/lsst/products/DarwinX86/fftw/3.3.3-1-g8fdba61/lib -lfftw3 -llapackstub
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and the symbols do seem to be defined in the library:
nm -oa /Users/lsst/products/DarwinX86/fftw/3.3.3-1-g8fdba61/lib/* 2>/dev/null | grep fftwf_free
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/Users/lsst/products/DarwinX86/fftw/3.3.3-1-g8fdba61/lib/libfftw3f.3.dylib: 00000000000cb4d0 T _fftwf_free
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/Users/lsst/products/DarwinX86/fftw/3.3.3-1-g8fdba61/lib/libfftw3f.a:malloc.o: 0000000000000010 T _fftwf_free
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/Users/lsst/products/DarwinX86/fftw/3.3.3-1-g8fdba61/lib/libfftw3f.dylib: 00000000000cb4d0 T _fftwf_free
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So maybe the linker's finding some other fftw?