Details

    • Type: Technical task
    • Status: Done
    • Resolution: Done
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None
    • Team:
      SQuaRE

      Description

      1.0.1 on ec2 instance

      [build0@jenkins-el6-1 ~]$ git lfs version
      git-lfs/1.0.1 (GitHub; linux amd64; go 1.5.1; git a999185)
      [build0@jenkins-el6-1 ~]$ time git clone -c filter.lfs.required -c filter.lfs.smudge='git-lfs smudge %f' -c filter.lfs.clean='git-lfs clean %f' -c credential.helper='!f() { cat > /dev/null; echo username=; echo password=; }; f' https://github.com/lsst/afwdata-cowboy.git 
      Cloning into 'afwdata-cowboy'...
      remote: Counting objects: 411, done.
      remote: Total 411 (delta 0), reused 0 (delta 0), pack-reused 411
      Receiving objects: 100% (411/411), 54.88 KiB | 0 bytes/s, done.
      Resolving deltas: 100% (51/51), done.
      Checking connectivity... done.
      Downloading CFHT/D2/sdss.dat (110.68 KB)
       
       
      ^Cwarning: Clone succeeded, but checkout failed.
      You can inspect what was checked out with 'git status'
      and retry the checkout with 'git checkout -f HEAD'
       
       
      Exiting because of "interrupt" signal.
       
       
      real	5m53.733s
      user	0m0.045s
      sys	0m0.063s
      

      1.0.2 on desktop in tucson

      [master] ~/tmp $ git lfs version
      git-lfs/1.0.2 (GitHub; linux amd64; go 1.5.1; git 0566698)
      [master] ~/tmp $  time git clone -c filter.lfs.required -c filter.lfs.smudge='git-lfs smudge %f' -c filter.lfs.clean='git-lfs clean %f' -c credential.helper='!f() { cat > /dev/null; echo username=; echo password=; }; f' https://github.com/lsst/afwdata-cowboy.git
      Cloning into 'afwdata-cowboy'...
      remote: Counting objects: 411, done.
      remote: Total 411 (delta 0), reused 0 (delta 0), pack-reused 411
      Receiving objects: 100% (411/411), 54.88 KiB | 0 bytes/s, done.
      Resolving deltas: 100% (51/51), done.
      Checking connectivity... done.
      Downloading CFHT/D2/sdss.dat (110.68 KB)
       
      ^Cwarning: Clone succeeded, but checkout failed.
      You can inspect what was checked out with 'git status'
      and retry the checkout with 'git checkout -f HEAD'
       
       
      Exiting because of "interrupt" signal.
       
      real	3m20.946s
      user	0m0.094s
      sys	0m0.049s
      
      

      1.0.0 on desktop in tucson

      $ git clone -c credential.helper='!f() { cat > /dev/null; echo username=; echo password=; }; f' https://github.com/lsst/afwdata-cowboy.git afwdata-cowboy2
      Cloning into 'afwdata-cowboy2'...
      remote: Counting objects: 411, done.
      remote: Total 411 (delta 0), reused 0 (delta 0), pack-reused 411
      Receiving objects: 100% (411/411), 54.88 KiB | 0 bytes/s, done.
      Resolving deltas: 100% (51/51), done.
      Checking connectivity... done.
      Downloading CFHT/D2/sdss.dat (110.68 KB)
      Downloading CFHT/D2/template.dat (4.25 MB)
      Downloading CFHT/D4/cal-53535-i-797722_1.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_1_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_2.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_2_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_3.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_3_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_4.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_4_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_5.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_5_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_6.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_6_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_7.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_7_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_8.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_8_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_9.fits (93.60 MB)
      Downloading CFHT/D4/cal-53535-i-797722_9_tmpl.fits (84.34 MB)
      Downloading CFHT/D4/cal-53535-i-797722_small_1.fits (658.12 KB)
      Downloading CFHT/D4/cal-53535-i-797722_small_1_tmpl.fits (658.12 KB)
      Downloading DC3a-Sim/sci/v26-e0/v26-e0-c011-a00.sci.fits (10.02 MB)
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      Downloading ImSim/calexp/v85408556-fr/R23/S11.fits (155.43 MB)
      Downloading ImSim/dark/v1/R23/S11/imsim_1_R23_S11_C00.fits (9.86 MB)
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      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C00.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C01.fits (9.86 MB)
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      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C04.fits (9.86 MB)
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      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C10.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C11.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C12.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C13.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C14.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C15.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C16.fits (9.86 MB)
      Downloading ImSim/flat/v2-fr/R23/S11/imsim_2_R23_S11_C17.fits (9.86 MB)
      Downloading ImSim/icMatch/v85408556-fr/R23/S11.fits (19.69 KB)
      Downloading ImSim/icSrc/v85408556-fr/R23/S11.boost (1.62 MB)
      Downloading ImSim/postISR/v85751839-fr/s0/R23/S11/C00.fits (9.84 MB)
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      Downloading ImSim/postISR/v85751839-fr/s1/R23/S11/C00.fits (9.83 MB)
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      Downloading ImSim/postISRCCD/v85751839-fr/s0/R23-S11.fits (155.39 MB)
      Downloading ImSim/postISRCCD/v85751839-fr/s1/R23-S11.fits (155.38 MB)
      Downloading ImSim/psf/v85408556-fr/R23/S11.boost (11.99 KB)
      Downloading ImSim/raw/v85408556-fr/E000/R23/S11/imsim_85408556_R23_S11_C00_E000.fits.gz (1.02 MB)
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            jmatt J Matt Peterson [X] (Inactive) added a comment -

            Thanks for reporting this!

            First off, with 1.0.1+ you may need a -c lfs.batch=false.

            In the config the setting looks like this:

            [lfs]
            batch = false

            I had a problem on linux cloning and this fixed it. Though I don't know if it's this exact problem.

            Show
            jmatt J Matt Peterson [X] (Inactive) added a comment - Thanks for reporting this! First off, with 1.0.1+ you may need a -c lfs.batch=false. In the config the setting looks like this: [lfs] batch = false I had a problem on linux cloning and this fixed it. Though I don't know if it's this exact problem.
            Hide
            jmatt J Matt Peterson [X] (Inactive) added a comment -

            It does explain the hangs indefinitely - because it's just making a bunch of git-lfs batch API calls that are not recognized by the git-lfs server.

            Show
            jmatt J Matt Peterson [X] (Inactive) added a comment - It does explain the hangs indefinitely - because it's just making a bunch of git-lfs batch API calls that are not recognized by the git-lfs server.
            Hide
            frossie Frossie Economou added a comment -

            Okay, documentation fix then. Update the docs and close the ticket.

            Show
            frossie Frossie Economou added a comment - Okay, documentation fix then. Update the docs and close the ticket.
            Hide
            jmatt J Matt Peterson [X] (Inactive) added a comment - - edited

            I verified that this works:

            time git clone -c filter.lfs.required -c filter.lfs.smudge='git-lfs smudge %f' -c filter.lfs.clean='git-lfs clean %f' -c credential.helper='!f() { cat > /dev/null; echo username=; echo password=; }; f' -c lfs.batch=false https://github.com/lsst/afwdata-cowboy.git
            

            Show
            jmatt J Matt Peterson [X] (Inactive) added a comment - - edited I verified that this works: time git clone -c filter.lfs.required -c filter.lfs.smudge= 'git-lfs smudge %f' -c filter.lfs.clean= 'git-lfs clean %f' -c credential.helper= '!f() { cat > /dev/null; echo username=; echo password=; }; f' -c lfs.batch= false https: //github .com /lsst/afwdata-cowboy .git
            Hide
            jmatt J Matt Peterson [X] (Inactive) added a comment -

            Add this option to the command:

            -c lfs.batch=false

            time git clone -c filter.lfs.required -c filter.lfs.smudge='git-lfs smudge %f' -c filter.lfs.clean='git-lfs clean %f' -c credential.helper='!f() { cat > /dev/null; echo username=; echo password=; }; f' -c lfs.batch=false https://github.com/lsst/afwdata-cowboy.git
            

            Show
            jmatt J Matt Peterson [X] (Inactive) added a comment - Add this option to the command: -c lfs.batch=false time git clone -c filter.lfs.required -c filter.lfs.smudge= 'git-lfs smudge %f' -c filter.lfs.clean= 'git-lfs clean %f' -c credential.helper= '!f() { cat > /dev/null; echo username=; echo password=; }; f' -c lfs.batch= false https: //github .com /lsst/afwdata-cowboy .git
            Hide
            ktl Kian-Tat Lim added a comment - - edited

            Is it possible to add this to the in-repo .gitconfig instead of recommending that it be set globally?

            ETA: Never mind, I see you did that. But in that case, changing the documentation to recommend the global setting is inappropriate.

            Show
            ktl Kian-Tat Lim added a comment - - edited Is it possible to add this to the in-repo .gitconfig instead of recommending that it be set globally? ETA: Never mind, I see you did that. But in that case, changing the documentation to recommend the global setting is inappropriate.
            Hide
            jmatt J Matt Peterson [X] (Inactive) added a comment - - edited

            I had a chance to investigate what was going on and I think I have a root cause.

            The git-lfs client defaults to the batch API now and no longer evaluates the lfs.batch option that is in the repo/.gitconfig. There was concern over the repo's .gitconfig being evaluated on clone by the git-lfs client. To address this they created a whitelist of options. See git-lfs PR 760. The option we need is not whitelisted: lfs.batch. I asked in gitter about batch=false support and it's completely unsupported at this point. If the devs have their way they'll remove it. With v1.1 there are a few relevant issues: .gitconfig is becoming .lfsconfig, readGitConfig refactor and investigate refactoring the API. I suspect that they will remove the v1 API when they refactor the API. It'll simplify and unify the API significantly.

            I think the best plan is I just fork git-lfs, implement lfs.batch in the whitelist of lfs options and submit a PR to github. There is zero interest by the devs to do anything related to the old API, otherwise I would just post an issue.

            Note: Edited to switching between md, rst, mediawiki, latex formatting etc...

            Show
            jmatt J Matt Peterson [X] (Inactive) added a comment - - edited I had a chance to investigate what was going on and I think I have a root cause. The git-lfs client defaults to the batch API now and no longer evaluates the lfs.batch option that is in the repo/.gitconfig. There was concern over the repo's .gitconfig being evaluated on clone by the git-lfs client. To address this they created a whitelist of options. See git-lfs PR 760 . The option we need is not whitelisted: lfs.batch . I asked in gitter about batch=false support and it's completely unsupported at this point. If the devs have their way they'll remove it. With v1.1 there are a few relevant issues: .gitconfig is becoming .lfsconfig , readGitConfig refactor and investigate refactoring the API . I suspect that they will remove the v1 API when they refactor the API. It'll simplify and unify the API significantly. I think the best plan is I just fork git-lfs, implement lfs.batch in the whitelist of lfs options and submit a PR to github. There is zero interest by the devs to do anything related to the old API, otherwise I would just post an issue. Note: Edited to switching between md, rst, mediawiki, latex formatting etc...
            Hide
            ktl Kian-Tat Lim added a comment -

            The plan seems good, but am I correct that it sounds like we'll need a batch API implementation sooner rather than later?

            Show
            ktl Kian-Tat Lim added a comment - The plan seems good, but am I correct that it sounds like we'll need a batch API implementation sooner rather than later?
            Hide
            jmatt J Matt Peterson [X] (Inactive) added a comment -

            Yes,

            That would be ideal but will take longer than a PR to the git-lfs client.

            I didn't bring it up because I know it goes against (my understanding) of the immediate goals that Frossie has for git-lfs. Which is to get the prototype into the CI workflow. In the meanwhile I can move on to my next task - messaging, logging and metrics. The batch AP will still be implemented but part-time and as a break from my next task.

            I'm Ok with either approach. At this point it's just a scheduling problem. Either way the batch API will be implemented soon.

            Show
            jmatt J Matt Peterson [X] (Inactive) added a comment - Yes, That would be ideal but will take longer than a PR to the git-lfs client. I didn't bring it up because I know it goes against (my understanding) of the immediate goals that Frossie has for git-lfs. Which is to get the prototype into the CI workflow. In the meanwhile I can move on to my next task - messaging, logging and metrics. The batch AP will still be implemented but part-time and as a break from my next task. I'm Ok with either approach. At this point it's just a scheduling problem. Either way the batch API will be implemented soon.

              People

              • Assignee:
                jmatt J Matt Peterson [X] (Inactive)
                Reporter:
                jhoblitt Joshua Hoblitt
                Watchers:
                Frossie Economou, J Matt Peterson [X] (Inactive), Joshua Hoblitt, Kian-Tat Lim
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                4 Start watching this issue

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                • Created:
                  Updated:
                  Resolved:

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