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  1. Data Management
  2. DM-9724

Error installing sims_catalog

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    • Type: Bug
    • Status: Done
    • Resolution: Done
    • Fix Version/s: None
    • Component/s: None
    • Labels:
      None

      Description

      I get the following error installing sims_catalog on current master:

      [2017-03-05T22:58:05.422745Z] Failed test output:
      		 
      [2017-03-05T22:58:05.435037Z] tests/testCompoundCatalogDBObject.py
      		 
      [2017-03-05T22:58:05.435053Z]
      		 
      [2017-03-05T22:58:05.435183Z] /Volumes/PS1/lsstsw/build/sims_catalogs/python/lsst/sims/catalogs/db/dbConnection.py:455: UserWarning: duplicate object identifier class4 specified. This will override previous definition on line 48 of tests/testCompoundCatalogDBObject.py
      		 
      [2017-03-05T22:58:05.435207Z]   (srcline, srcfile))
      		 
      [2017-03-05T22:58:05.435324Z] ../Volumes/PS1/lsstsw/build/sims_catalogs/python/lsst/sims/catalogs/db/dbConnection.py:455: UserWarning: duplicate object identifier dummy specified. This will override previous definition on line 206 of tests/testCompoundCatalogDBObject.py
      		 
      [2017-03-05T22:58:05.435339Z]   (srcline, srcfile))
      		 
      [2017-03-05T22:58:05.435483Z] ..../Users/wmwv/lsstsw/stack/DarwinX86/sqlalchemy/1.0.8.lsst3+3/lib/python/SQLAlchemy-1.0.8-py2.7-macosx-10.10-x86_64.egg/sqlalchemy/sql/elements.py:3779: SAWarning: Textual SQL expression 'mag<11.0' should be explicitly declared as text('mag<11.0') (this warning may be suppressed after 10 occurrences)
      		 
      [2017-03-05T22:58:05.435511Z]   {"expr": util.ellipses_string(element)})
      		 
      [2017-03-05T22:58:05.435687Z] E/Users/wmwv/lsstsw/stack/DarwinX86/sqlalchemy/1.0.8.lsst3+3/lib/python/SQLAlchemy-1.0.8-py2.7-macosx-10.10-x86_64.egg/sqlalchemy/sql/elements.py:3779: SAWarning: Textual SQL expression 'ra between 100.000000 and...' should be explicitly declared as text('ra between 100.000000 and...') (this warning may be suppressed after 10 occurrences)
      		 
      [2017-03-05T22:58:05.435724Z]   {"expr": util.ellipses_string(element)})
      		 
      [2017-03-05T22:58:05.435732Z] EE..
      		 
      [2017-03-05T22:58:05.435770Z] ======================================================================
      		 
      [2017-03-05T22:58:05.435801Z] ERROR: testContraint (__main__.CompoundWithObsMetaData)
      		 
      [2017-03-05T22:58:05.435839Z] ----------------------------------------------------------------------
      		 
      [2017-03-05T22:58:05.435860Z] Traceback (most recent call last):
      		 
      [2017-03-05T22:58:05.435899Z]   File "tests/testCompoundCatalogDBObject.py", line 675, in testContraint
      		 
      [2017-03-05T22:58:05.435946Z]     self.assertAlmostEqual(line['%s_raJ2000' % db1.objid], self.controlArray['ra'][ix], 10)
      		 
      [2017-03-05T22:58:05.436018Z] IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices
      		 
      [2017-03-05T22:58:05.436026Z]
      		 
      [2017-03-05T22:58:05.436064Z] ======================================================================
      		 
      [2017-03-05T22:58:05.436095Z] ERROR: testObsMetaData (__main__.CompoundWithObsMetaData)
      		 
      [2017-03-05T22:58:05.436133Z] ----------------------------------------------------------------------
      		 
      [2017-03-05T22:58:05.436154Z] Traceback (most recent call last):
      		 
      [2017-03-05T22:58:05.436194Z]   File "tests/testCompoundCatalogDBObject.py", line 622, in testObsMetaData
      		 
      [2017-03-05T22:58:05.436240Z]     self.assertAlmostEqual(line['%s_raJ2000' % db1.objid], self.controlArray['ra'][ix], 10)
      		 
      [2017-03-05T22:58:05.436305Z] IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices
      		 
      [2017-03-05T22:58:05.436310Z]
      		 
      [2017-03-05T22:58:05.436347Z] ======================================================================
      		 
      [2017-03-05T22:58:05.436384Z] ERROR: testObsMetadataAndConstraint (__main__.CompoundWithObsMetaData)
      		 
      [2017-03-05T22:58:05.436421Z] ----------------------------------------------------------------------
      		 
      [2017-03-05T22:58:05.436442Z] Traceback (most recent call last):
      		 
      [2017-03-05T22:58:05.436488Z]   File "tests/testCompoundCatalogDBObject.py", line 731, in testObsMetadataAndConstraint
      		 
      [2017-03-05T22:58:05.436535Z]     self.assertAlmostEqual(line['%s_raJ2000' % db1.objid], self.controlArray['ra'][ix], 10)
      		 
      [2017-03-05T22:58:05.436598Z] IndexError: only integers, slices (`:`), ellipsis (`...`), numpy.newaxis (`None`) and integer or boolean arrays are valid indices
      		 
      [2017-03-05T22:58:05.436623Z]
      		 
      [2017-03-05T22:58:05.436661Z] ----------------------------------------------------------------------
      		 
      [2017-03-05T22:58:05.436677Z] Ran 11 tests in 0.754s
      		 
      [2017-03-05T22:58:05.436682Z]
      		 
      [2017-03-05T22:58:05.436695Z] FAILED (errors=3)
      		 
      [2017-03-05T22:58:05.436713Z] The following tests failed:
      		 
      [2017-03-05T22:58:05.441293Z] /Volumes/PS1/lsstsw/build/sims_catalogs/tests/.tests/testCompoundCatalogDBObject.py.failed
      		 
      [2017-03-05T22:58:05.441535Z] 1 tests failed
      		 
      [2017-03-05T22:58:05.442545Z] scons: *** [checkTestStatus] Error 1
      		 
      [2017-03-05T22:58:05.445721Z] scons: building terminated because of errors.

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          relates to

          Story - Created by Jira Software - do not edit or delete. Issue type for a user story. DM-9316 meas_base tests broken with NumPy 1.12

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            wmwood-vasey Michael Wood-Vasey added a comment - - edited

            ix is a float. That's not allowed as of at least numpy version 1.12.

            Show
            wmwood-vasey Michael Wood-Vasey added a comment - - edited ix is a float . That's not allowed as of at least numpy version 1.12 .
            Hide
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            swinbank John Swinbank added a comment -

            Perhaps a SIM rather than a DM issue?

            Show
            swinbank John Swinbank added a comment - Perhaps a SIM rather than a DM issue?
            Hide
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            wmwood-vasey Michael Wood-Vasey added a comment -

            Yes, sorry. DM is just the default Project when creating a ticket.

            I also keep forgetting that they're separate.

            But that explains why I couldn't find the Sims component

            Show
            wmwood-vasey Michael Wood-Vasey added a comment - Yes, sorry. DM is just the default Project when creating a ticket. I also keep forgetting that they're separate. But that explains why I couldn't find the Sims component
            Hide
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            wmwood-vasey Michael Wood-Vasey added a comment -

            I pushed to `tickets/DM-9724` the trivial change of wrapping the ix = int(line['id']) in the testing code.

            But I don't know whether it's only the testing code that is a bit careless about the indexing, or if the general uses of the `sims_catalogs` do this as well.

            Show
            wmwood-vasey Michael Wood-Vasey added a comment - I pushed to `tickets/ DM-9724 ` the trivial change of wrapping the ix = int(line ['id'] ) in the testing code. But I don't know whether it's only the testing code that is a bit careless about the indexing, or if the general uses of the `sims_catalogs` do this as well.
            Hide
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            wmwood-vasey Michael Wood-Vasey added a comment -

            Oh, but I can't even push to `sims_catalogs`. I'll follow up with Scott Daniel

            Show
            wmwood-vasey Michael Wood-Vasey added a comment - Oh, but I can't even push to `sims_catalogs`. I'll follow up with Scott Daniel
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            wmwood-vasey Michael Wood-Vasey added a comment -

            PR submitted

            https://github.com/lsst/sims_catalogs/pull/7

            Show
            wmwood-vasey Michael Wood-Vasey added a comment - PR submitted https://github.com/lsst/sims_catalogs/pull/7
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            wmwood-vasey Michael Wood-Vasey added a comment -

            Scott Daniel reviewed and approved the PR.

            Show
            wmwood-vasey Michael Wood-Vasey added a comment - Scott Daniel reviewed and approved the PR.

              People

              Assignee:
              wmwood-vasey Michael Wood-Vasey
              Reporter:
              wmwood-vasey Michael Wood-Vasey
              Watchers:
              John Swinbank, Michael Wood-Vasey, Scott Daniel
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              Watchers:
              3 Start watching this issue

                Dates

                Created:
                Updated:
                Resolved: