diff --git a/.gitignore b/.gitignore
index 8e4fbb9..f1f8e35 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,7 +1,10 @@
 .pyvenv
 _build
+_doxygen
 modules
 packages
 py-api
+cpp-api
 _static/pipe_base
 _static/verify
+_static/display_firefly
diff --git a/conf.py b/conf.py
index 413f0a6..124386d 100644
--- a/conf.py
+++ b/conf.py
@@ -4,10 +4,4 @@ These configurations are centrally defined in Documenteer
 (https://github.com/lsst-sqre/documenteer).
 """
 
-from documenteer.sphinxconfig.stackconf import \
-    build_pipelines_lsst_io_configs
-
-
-globals().update(build_pipelines_lsst_io_configs(
-    project_name='LSST Science Pipelines',
-))
+from documenteer.conf.pipelines import *
diff --git a/index.rst b/index.rst
index f64dccf..dbcb2cc 100644
--- a/index.rst
+++ b/index.rst
@@ -65,8 +65,6 @@ Python modules
 
 .. module-toctree::
 
-Additional C++ API reference documentation is currently available at the `doxygen.lsst.codes <http://doxygen.lsst.codes/stack/doxygen/x_masterDoxyDoc/namespaces.html>`__ site.
-
 .. _part-packages:
 
 Packages
@@ -92,16 +90,27 @@ Release details
 
 .. _part-indices:
 
-Indices
-=======
+Reference and indices
+=====================
 
 .. toctree::
    :maxdepth: 1
    :hidden:
 
    Tasks <tasks>
+   cpp-api/namespacelist
+   cpp-api/classlist
+   cpp-api/structlist
+   cpp-api/filelist
 
 - :doc:`Tasks <tasks>`
+- C++ API reference:
+
+  - :doc:`cpp-api/namespacelist`
+  - :doc:`cpp-api/classlist`
+  - :doc:`cpp-api/structlist`
+  - :doc:`cpp-api/filelist`
+
 - :ref:`genindex`
 - :ref:`Search <search>`
 
@@ -111,7 +120,6 @@ More info
 - Join us on the `LSST Community forum, community.lsst.org <http://community.lsst.org>`_.
 - Fork our code on GitHub at https://github.com/lsst.
 - Report issues in `JIRA <https://jira.lsstcorp.org/projects/DM/issues/>`_.
-- Some API documentation, particularly for C++, is currently published separately on a `Doxygen site <http://doxygen.lsst.codes/stack/doxygen/x_masterDoxyDoc/>`_.
 - DM Developer guidance is at https://developer.lsst.io.
 - Learn more about LSST Data Management by visiting http://lsst.org/about/dm.
 - Contribute to our documentation. This guide is on GitHub at `lsst/pipelines_lsst_io <https://github.com/lsst/pipelines_lsst_io>`_.